PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_6B75B32E3.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 313aa    MW: 33032 Da    PI: 10.5924
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_6B75B32E3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.3e-31223280359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp ++++tYegeH+h+
  Traes_2BL_6B75B32E3.1 223 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERALDDPAMLVVTYEGEHRHS 280
                            9************************9888****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.2E-17177219IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.9E-32209280IPR003657WRKY domain
PROSITE profilePS5081130.125216282IPR003657WRKY domain
SuperFamilySSF1182903.27E-26219280IPR003657WRKY domain
SMARTSM007744.6E-37221281IPR003657WRKY domain
PfamPF031063.3E-26223279IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAVDLMGCYT PRRADDQLAI QEAATAGLRS LELLVSSLSG AAPSKAPQQH PQQPFGEIAD  60
QAVSKFRKVI SILDRTGHAR FRRGPVQSAP PPPPPPAPVA PPPPPPLTVV APVSVAAPLP  120
QPQSLTLDFT KPNLTMSGAT SVTSTSFFSS VTAGEGSVSK GRSLVSAGKP PLSGHKRKPC  180
AGAHSEANTT GSRCHCSKRR KNRVKTTVRV PAVSAKIADI PPDEYSWRKY GQKPIKGSPY  240
PRGYYKCSTV RGCPARKHVE RALDDPAMLV VTYEGEHRHS PGPMPMQMAP SPMPMPMGAP  300
VAVASVSAGN GHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21209280272WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8274040.0KR827404.1 Triticum aestivum WRKY53 transcriptional factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447056.11e-141hypothetical protein SORBIDRAFT_06g027710
SwissprotQ9SV153e-98WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLW5BAX90.0W5BAX9_WHEAT; Uncharacterized protein
STRINGGRMZM2G071907_P011e-146(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.19e-70WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]